Getting file locations from FCKEditor

OK, my problem is that they use different config mechanisms - FCKeditor itself is fine because it uses a class I can override. The standard file manager and CKFinder use static config files, and effectively require me to put bits of my app code inside them. This is not good for reliable integration. It should be possible to use a library without having to edit it (though setting 'enabled' is reasonable from a security point of view). Would it be a reasonable feature request to improve the config mechanism so it can be used more easily, or even enable the file manager and CKFinder to get config data from the editor?