Cannot get LoopIndex track changes to show buttons [Drupal]

Hello,

I used the CKBuilder to add LoopIndex track changes to the CKEditor but I cannot get it to work properly.

I'm using the drupal standalone module (https://drupal.org/documentation/modules/ckeditor) for CKEditor and the editor itself seems to load fine. I also added in the word counter just to see if that would work and it did. I'm confused on why the track change plugin isnt working though. It seems like sometimes the functionality works because if I switch to plain text mode I can see "Last edited by" and stuff like that. The buttons however do not show in the toolbar. I added my build config if anyone wants to try and use it.

I've tried adding the lite plugin with config.extraPlugins = 'lite' but that doesnt do anything. In fact, if I change anything in the default ckeditor/ckeditor/config.js file nothing happens. (even just a simple alert("hi"); or trying to change the UI Color) I've also tried manually adding them with:

var lt = conf.lite = conf.lite || {};
lt.commands = ["lite.ToggleShow", "lite.RejectOne"]; 

If I go to Configuration->Content Authoring->CKeditor, select Filtered HTML and then click on apperance, I don't see any of the track change buttons show up in that list either.

Should I be editing modules/ckeditor/ckeditor.config.js or modules/ckeditor/ckeditor/config.js?

Has anyone successfully gotten this plugin to work? The documentation on their website is not helping me at all and I've read through every single forum post and so has my partner. Neither of us can get these buttons to show up. Any help would be much apprietated.

Thanks!